In-Vivo Calcium Imaging Data Analysis Solutions

Essential tools for conducting in-vivo calcium imaging analysis for Miniscope data. Discover MetaCell's solutions today.

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Essential tools to help you conduct in-vivo calcium imaging analysis for Miniscope data.

MetaCell is providing a new set of tools & services to support neuroscientists who work with Miniscope, a portable miniaturized microscope that allows neuroscientists to image fluorescence from calcium reporters in freely behaving subjects.

Analyzing the raw images to extract information about neuronal excitability requires advanced computational approaches and tools.

MetaCell's Cloud Workspace provides an easy to use online notebook based on Jupyter. For those who just want analysis taken care of, we have an Analysis on Demand service to simplify your analysis process. For those who just need a little help getting their setup running, our analysis support service will help you get up to speed.

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Cloud Workspace

Trouble setting up your analysis environment? MetaCell's Cloud-based data science workspaces removes all the hassle and gets you started faster and more reliably.

Miniscope mouse

Analysis On Demand

Do you need help to analyze and present your calcium imaging data? Our team of experts will perform analysis on your data sets for you and give you back results on demand.

Miniscope support

Analysis Support

Run into trouble with an open source analysis pipeline? Our one-on-one expert support on image processing or pipeline set-up will help you overcome your challenges.

MetaCell Cloud Workspaces for Calcium Imaging Analysis

Turn-key solution to rapidly set up and execute calcium imaging data analysis, especially using Miniscopes

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Used as the foundation for a recent Virtual Miniscope Workshop Hands-on Analysis Tutorial attended by two dozen top neuroscientists, our Cloud Workspaces online product enables you and your lab to easily access a pre-configured online notebook system, ready to go with the Minian pipeline used in the Hands-on Analysis Tutorial. Your workspace will have 25 GB of disk space by default to work with images collected from a Miniscope, which can be upscaled by demand.

Why use a Cloud Workspace?

  • Zero setup environment: Trouble knowing where to begin to set up your laptops for Miniscope Analysis? With a Cloud Workspace, code libraries are loaded, version incompatibilities are navigated, and files are put in the right places.
  • Works the same on every device: Have trouble running analysis the same way both in lab, at home, and on the go? Avoid the hassle of incompatible local devices with a Cloud Workspace.
  • Analysis tracking: Ever lose track of the process you used to analyse data? Cloud Workspaces keeps track of your steps.
  • Sharing data: Ever lose track of experimental data? Sharing, communicating with your colleagues, and replicating the same analysis by others is easier with Cloud Workspaces.
  • Easy access to support: Had trouble getting the right support when doing your analysis? With a Cloud Workspace, support is just a click away.

What do you get?

  • Jupyter Notebook environment preconfigured with Minian libraries pre-installed and a quick-start notebook ready to run on demo data
  • Demo data set corresponding with the content from the Virtual Miniscope Workshop Hands-on Analysis Tutorial for training purposes
  • Compute and disk space optimized for running calcium imaging data analysis as fast or faster than a laptop or desktop computer
  • A user account that allows you log in to your workspace environment, which stores the latest analysis code and computed results, easy to download back to your local system when necessary
  • Access to one-on-one support for additional help

Need additional customizations? Just let us know and we are happy to help!

Subscription options

By activating a subscription of Cloud Workspace, within minutes you can have any of the following:

  • Individual workspace: Single user with access to compute, disk, customized environment, support
  • Lab workspace: Multiple users with individual workspaces as above, additionally having shared storage between workspaces
  • Training workspace: Multiple users with Lab workspaces as above, plus the ability to have virtual classroom where instructors are able to provide live guidance to students

Fill out this form and we will respond back ASAP to help set you up.

Calcium Imaging Data Analysis On Demand

Our cutting-edge Data Science as a Service

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New to imaging data analysis? If you have a dataset and you need a consultation on how to store, process, analyze, and present your data, contact us! Our team of experts will create a custom solution to solve your neuroscience data analysis issues.

We can help you to:

  • Bulk analyze large amounts of data;
  • Design new analysis pipelines;
  • Develop a suite to store, analyze and visualize your data through an intuitive user interface.

Fill out this form and we will respond back ASAP to help set you up.

One-on-one Support for your Calcium Imaging Analysis

Expert support at your fingertips

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Miniscope support

Do you have questions specific to your dataset that require a 1:1 discussion? Problems running code from an open source library? Get in touch! We offer personalized support on image processing, pipeline set-up, and a lot more.